Fungal Diseases of Cotton in Pakistan: Trends, Threats, and Strategic Interventions for Sustainable Management

Authors

  • Karamat Ali Zohaib Department of Plant Pathology, University of the Punjab, Lahore
  • Sumra Ashraf Department of Entomology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
  • Ghzanfar Ali Khan Guard rice Lahore, Pakistan
  • Beenish Rasheed Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
  • Adnan Akhter Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
  • Waheed Anwar Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
  • Muhammad Taqqi Abbas Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
  • Samina Hassan Kinnaird college for women Lahore, Pakistan
  • Alia Batool Department of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

DOI:

https://doi.org/10.55627/pbulletin.005.01.1771

Keywords:

Climate change, cotton, Disease management, fungal pathogens, sustainable agriculture

Abstract

Cotton (Gossypium hirsutum) is a vital cash crop and a foundational pillar of Pakistan’s economy, particularly for its textile sector. Despite being among the top cotton producers globally, the country’s cotton yields are persistently hampered by fungal diseases. These pathogens significantly affect cotton throughout its growth stages, resulting in considerable yield losses, fiber degradation, and economic setbacks. This document describes the past and present scenario of cotton fungal diseases in Pakistan, detailing key pathogens, their epidemiology, and transmission. Additionally, the present work integrates recent findings, describes the integrated disease management strategies, examines technical developments, and discusses prevailing challenges. The paper is aimed to outline strategic suggestions for the reduction of disease effects and ensuring the long-term sustainability of Pakistani cotton production.

Author Biographies

  • Karamat Ali Zohaib, Department of Plant Pathology, University of the Punjab, Lahore

    Deparrtment of Plant Pathology

  • Sumra Ashraf, Department of Entomology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

    Department of Entomology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

  • Ghzanfar Ali Khan, Guard rice Lahore, Pakistan

    Guard rice Lahore, Pakistan

  • Beenish Rasheed, Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

    Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

  • Adnan Akhter, Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

    Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

  • Waheed Anwar, Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

    ¹Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

  • Muhammad Taqqi Abbas, Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

    Department of Plant Pathology, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

  • Alia Batool, Department of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

    Department of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan

References

Abbas, A., Mubeen, M., Sohail, M. A., Solanki, M. K., Hussain, B., Nosheen, S., ... & Fang, X. (2022). Root rot a silent alfalfa killer in China: Distribution, fungal, and oomycete pathogens, impact of climatic factors and its management. Frontiers in microbiology, 13, 961794.Adeleke, A. (2024). Technological Advancements in Cotton Agronomy: A Review and Prospects. MDPI AG. https://doi.org/10.20944/preprints202402.1342.v1

Adeleke, A. (2024). Technological Advancements in Cotton Agronomy: A Review and Prospects. MDPI AG. https://doi.org/10.20944/preprints202402.1342.v1

Ahmad, S., Ahmad, I., Ahmad, B., Ahmad, A., Wajid, A., Khaliq, T., Abbas, G., Wilkerson, C., & Hoogenboom, G. (2023). Regional integrated assessment of climate change impact on cotton production in a semi-arid environment. Climate Research, 89, 113–132. https://doi.org/10.3354/cr01710

Ahmed, M., et al. (2023). Advances in molecular breeding and CRISPR-based editing for cotton resistance to fungal pathogens. Plant Biotechnology Journal, 21(4), 765–782.

Ali, H., et al. (2018). Characterization of Pythium spp. causing damping-off in cotton seedlings in Pakistan. Pakistan Journal of Agricultural Sciences, 55(2), 321–328.

Ali, M. A., Hassan, M., Mehmood, M., Kazmi, D. H., Chishtie, F. A., & Shahid, I. (2022). The Potential Impact of Climate Extremes on Cotton and Wheat Crops in Southern Punjab, Pakistan. Sustainability, 14(3), 1609. https://doi.org/10.3390/su14031609

Arshad, M. U., Zhao, Y., Hanif, O., & Fatima, F. (2022). Evolution of overall cotton production and its determinants: implications for developing countries using Pakistan case. Sustainability, 14(2), 840.

Ashok, P. (2023). Fungal pathogens of cotton: Global distribution, impact, and management. Indian Phytopathology, 76(2), 201–212.

Ashraf, S., & Ashraf, I. (2024). Comprehensive Factor Analysis of Cotton Production Challenges in the Cotton Zone of Punjab, Pakistan. Pakistan Journal of Agricultural Sciences, 61(4).

Ashraf, S., Ch, K. M., Ashraf, I., & Akbar, N. (2024). A phenomenological inquiry into farmers’ experiences growing cotton in Punjab, Pakistan. Scientific Reports, 14(1). https://doi.org/10.1038/s41598-024-62950-y

Asif, R., Khan, M. A., & Iqbal, M. (2020). Evaluation of fungicides and bioagents against cotton wilt disease. Pakistan Journal of Phytopathology, 32(2), 101–108.

Asma, Illyas, M., Neelam Zeb, Arooj Javed, Iqra Shabbir, & Ayesha Bibi. (2025). A recent review on cotton and climate change in Pakistan: impacts, mitigation, and adaptation. Insights-Journal of Health and Rehabilitation, 3(2 (Health&Rehab)), 631–638. https://doi.org/10.71000/j14pen89

Ayub Agricultural Research Institute. Cotton diseases (Cot-Dis). Agriculture Department, Government of the Punjab. https://aari.punjab.gov.pk/Cot-Dis

Bai, Y., Smith, J., & Chen, L. (2020). Genome editing for disease resistance in tomato: CRISPR/Cas applications and future prospects. Plant Biotechnology Journal, 18(4), 735–749. https://doi.org/10.1111/pbi.13234

Baird, R. E., Wadl, P. A., & Mueller, J. D. (2003). Disease and insect pests of cotton under variable rainfall. Crop Protection, 22(3), 453–459.

Bajwa, K. S., Ali, M. U., Rao, A. Q., Kiani, S., Ahmad, F., Bakhsh, A., Noor, S., Abbas, Z., Ali, S., & Ali, G. M. (2024). From genes to fields: Environmental compatibility of herbicide tolerant transgenic cotton. Industrial Crops and Products, 209, 117903. https://doi.org/10.1016/j.indcrop.2023.117903

Bilal, M., & Jaghdani, T. J. (2024). Barriers to the adoption of multiple agricultural innovations: Insights from Bt cotton, wheat seeds, herbicides and no-tillage in Pakistan. International Journal of Agricultural Sustainability, 22(1). https://doi.org/10.1080/14735903.2024.2318934

Chaudhari, R. J., Bhale, U. N., & Khadse, A. C. (2020). Effect of weather parameters in relation to occurrence and development of leaf blight (Alternaria macrospora) of cotton. Biological Forum – An International Journal, 12(1), 483–487.

Chohan, S., Perveen, R., Abid, M., Tahir, M. N., & Sajid, M. (2020). Cotton diseases and their management. In A. Jabran & B. Chauhan (Eds.), Cotton production and uses: Agronomy, crop protection, and postharvest technologies (pp. 239–270). Singapore: Springer.

D’ONGHIA, A. M. (2015). the Joint International Congress: 14th Congress of the Mediterranean Phytopathological Union and International Society of Mycotoxicology (Mediterranean Branch) meeting, Istanbul, Turkey, 25–29 August 2014. Phytopathologia Mediterranea, 54(1), 140-196.

Eastburn, D. M., DeGennaro, M. M., DeLucia, E. H., Dermody, O., & McElrone, A. J. (2010). Climate change and plant disease management. Annual Review of Phytopathology, 48, 269–291. https://doi.org/10.1146/annurev-phyto-080508-081747

Food and Agriculture Organization of the United Nations (FAO). (2025). FAOSTAT: Production data for cotton. Rome: FAO. Retrieved from https://www.fao.org/faostat/en/#data/QCL

Haile, T., & Rao, M. S. (2023). Emerging fungal pathogens of cotton in Sub-Saharan Africa under climate change. African Journal of Plant Protection, 29(2), 87–99.

Hussain, I., Butt, T. M., Fatima, N., Rahman, W. U., & Ullah, M. K. (2025). Causes of cotton decline in pakistan: A comprehensive review. Acad Int J Social Sci, 4(1), 1191-1203.

Iftikhar Hussain, Tahir Munir Butt, Noor Fatima, Waqee Ur Rahman, & Muhammad Kaleem Ullah. (2025). Causes of Cotton Decline in Pakistan: A Comprehensive Review. ACADEMIA International Journal for Social Sciences, 4(1), 1191–1203.

International Cotton Advisory Committee. (2025). World cotton market projections 2025/26. Washington, DC: International Cotton Advisory Committee. Retrieved from https://icac.org/the-icac-releases-its-2025-26-world-cotton-market-projections

Javed, I., Khan, M. A., Riaz, H., Saeed, S., Ali, H., Bashair, M., & Haider, I. (2024). Sustainable management of Fusarium wilt in cotton through biological applications. Frontiers in Sustainable Food Systems, 8, 1–12.

Kabissa, J. C. (2015). Cotton in Tanzania: Breaking the jinx. Tanaznia Educational Publishers.

Kaur, S., Behera, L., & Chandel, A. (2020). Climate change-induced shifts in fungal pathogen distribution. Frontiers in Plant Science, 11, 561.

Khan, M. A., et al. (2024). Epidemiology and management of Fusarium wilt of cotton in Pakistan. Plant Disease, 108(6), 1401–1412.

Khasanov, B. A., Sherimbetov, A. G., Adilov, B. S., & Khakimov, A. A. (2023). Crop diseases in Uzbekistan caused by the species of the genus Fusarium: an Overview. Fusarium-Recent Studies.

Khatun, S. (2023). Soil-borne fungal diseases of cotton: Pathology and management. Bangladesh Journal of Plant Pathology, 39(1), 33–46.

Li, R., Zhao, Q., & Wang, H. (2022). Mapping and validation of QTLs for Fusarium wilt resistance in Gossypium hirsutum. Euphytica, 218(3), 45. https://doi.org/10.1007/s10681-022-03105-8

Luneja, R. L., & Mkindi, A. G. (2025). Advances in botanical-based nanoformulations for sustainable cotton insect pest management in developing countries. Frontiers in Agronomy, 7. https://doi.org/10.3389/fagro.2025.1558395

Luqman, M. (2023). Plant growth-promoting rhizobacteria and AI applications in cotton disease management. Journal of Crop Protection, 12(2), 99–118.

Malik, M. W. I., Usman, K., Hamza, A., & Saad, M. (2024). Optimizing Cotton-Wheat System Productivity Through Resource Conserving Techniques. Communications in Soil Science and Plant Analysis, 55(4), 536–549. https://doi.org/10.1080/00103624.2023.2274037

Maqbool, S. (2023). Remote sensing and GIS in mapping fungal diseases of cotton. Precision Agriculture, 24(5), 1121–1136.

Mehmood, H. Z., Abbas, A., Ullah, R., & Wudil, A. H. (2025). Sustainability analysis of better cotton: a cleaner and sustainable production alternative in Pakistan. The Journal of Animal and Plant Sciences, 1, 80–89. https://doi.org/10.36899/japs.2025.1.0006

Ministry of Climate Change, Pakistan. (2021). National biosafety guidelines for genetically modified organisms. Government of Pakistan. http://www.mocc.gov.pk/biosafety

National Research Council, Committee on Pest, Pathogen Control Through Management of Biological Control Agents, Enhanced Cycles, & Natural Processes. (1996). Ecologically based pest management: new solutions for a new century. National Academies Press.

Organisation for Economic Co-operation and Development & Food and Agriculture Organization of the United Nations. (2025). OECD-FAO agricultural outlook 2025–2034. Paris: OECD Publishing. Retrieved from https://www.oecd-ilibrary.org/agriculture-and-food/oecd-fao-agricultural-outlook-2025-2034_agr_outlook-2025-en

Palmer, S. (2013). Soil-borne diseases of cotton in Egypt: Current status and future threats. Egyptian Journal of Agricultural Research, 91(3), 201–215.

PCGA (Pakistan Cotton Ginners Association). (2025). Annual cotton production report 2024–25. Multan, Pakistan.

Shah, A. N., Javed, T., Singhal, R. K., Shabbir, R., Wang, D., Hussain, S., Anuragi, H., Jinger, D., Pandey, H., Abdelsalam, N. R., Ghareeb, R. Y., & Jaremko, M. (2022). Nitrogen use efficiency in cotton: Challenges and opportunities against environmental constraints. Frontiers in Plant Science, 13. https://doi.org/10.3389/fpls.2022.970339

Shahzadi, I., Mazhar, N., & Abbas, S. (2023). An assessment of changes and variability of climate impact on cotton production yield over Southern Punjab, Pakistan. Environment, Development and Sustainability, 26(11), 29331–29347. https://doi.org/10.1007/s10668-023-03867-w

Sharma, S., Pandey, S., Kulshreshtha, S., & Dubey, M. (2025). Biology and application of Chaetomium globosum as a biocontrol agent: current status and future prospects. Microorganisms, 13(7), 1646.

Shuli, F., Jarwar, A. H., Wang, X., Wang, L., & Ma, Q. (2018). Overview of the cotton in Pakistan and its future prospects. Pakistan Journal of Agricultural Research, 31(4), 396.

Silva, J. L., Araújo, L. A., & Cardoso, P. H. (2023). Seed-borne fungal pathogens of cotton: A global perspective. Brazilian Journal of Plant Pathology, 29(1), 41–53.

Singh, R. (2023). Advances in biotechnology for resistance breeding against cotton fungal pathogens in India. Indian Journal of Genetics and Plant Breeding, 83(2), 241–250.

Syed, A., Raza, T., Bhatti, T. T., & Eash, N. S. (2022). Climate Impacts on the agricultural sector of Pakistan: Risks and solutions. Environmental Challenges, 6, 100433. https://doi.org/10.1016/j.envc.2021.100433

Terefe, G., & Tesfaye, D. (2009). Review of research on diseases of fiber crops in Ethiopia. Abraham Tadesse (ed.).

Ullah, M. I., Hasnain, M., Luqman, M., Hussnain, H., Tauseef, M., Ahmad, A., Shahid, M., Abbas, Q., Hussain, M., Raza, A., Khan, M. M. A., Nadeem, M. K., & Nadeem, S. (2024). Evaluation of New Chemistry Insecticides against Sucking Insect Pests of Cotton. Sarhad Journal of Agriculture, 40(3). https://doi.org/10.17582/journal.sja/2024/40.3858.865

Wang, F., Liu, Y., & Zhang, X. (2023). CRISPR/Cas9-mediated editing of GhDREB2 enhances Fusarium wilt resistance in cotton. Plant Molecular Biology, 112(2), 147–159. https://doi.org/10.1007/s11103-023-01325-6

Waqar Akhtar, Muhammad Qasim, Abid Hussain, Nadeem Akmal, Hassnain Shah, Muhammad Ather Mahmood, & Rashid Saeed. (2024). Price Distortions and Competitiveness of Cotton Production in Pakistan. Proceedings of the Pakistan Academy of Sciences: B. Life and Environmental Sciences, 61(1). https://doi.org/10.53560/ppasb(61-1)715

Zhang, Y., Chen, H., & Li, M. (2021). QTL analysis of Verticillium wilt resistance in upland cotton. Crop Science, 61(5), 3152–3164. https://doi.org/10.1002/csc2.20589.

Downloads

Published

2026-03-08

How to Cite

Fungal Diseases of Cotton in Pakistan: Trends, Threats, and Strategic Interventions for Sustainable Management. (2026). Plant Bulletin, 5(1), 48-57. https://doi.org/10.55627/pbulletin.005.01.1771