Phenotypic plasticity and genetic stock identification of Sperata seenghala (Sykes, 1839), the giant river-catfish, at indus river, Sindh, Pakistan

Authors

  • Sumera Noonari Department of Fisheries and Aquatic Sciences, University of Sindh, Jamshoro, Sindh, Pakistan
  • Wazir Ali Baloch Department of Fisheries and Aquatic Sciences, University of Sindh, Jamshoro, Sindh, Pakistan
  • Huan Gao Huan Gao, School of Marine Science and Fisheries, Jiangsu Ocean University, China
  • Anila Naz Soomro Department of Fisheries and Aquatic Sciences, University of Sindh, Jamshoro, Sindh, Pakistan
  • Abdul Mueed Ganghro Livestock and Fisheries Department, Government of Sindh, Hyderabad, Sindh, Pakistan
  • Ghulam Rasool Qambrani Department of Fisheries and Aquatic Sciences, University of Sindh, Jamshoro, Sindh, Pakistan

DOI:

https://doi.org/10.55627/zoobotanica.003.01.1303

Keywords:

Catfish, Sperata seenghala, morphology, genetic study, indus river

Abstract

Traditional fish identification is based on morphological characteristics, whereas DNA-based identification has recently been considered a more reliable alternative method. The catfish are a significant group of freshwater fishes. Sperata seenghala is among the largest freshwater catfish of the subcontinent, occurring in the Indus River. A morphometric study concluded that the indus river system Sperata is closely related to S. seenghala with some physical differences. However, in the literature on Pakistan's fish diversity, only S. seenghala is documented. Research on Speratra in the Jamshoro stretch of the indus river revealed it as S. seenghala. This ambiguity in the nomenclature of S. seenghala needs genetic identification to resolve this issue. Thus, the present study evaluated the phenotypic plasticity and genetic stock identification of the S. seenghala at the Indus River, Sindh, Pakistan.

There were 151 fish specimens collected from the commercial fish catch at the indus river, Jamshoro, from August 2020 to July 2022. The fish were measured for total length (TL) (cm) and body weight (g) on the spot and then brought to the laboratory for morphological identification and genetic study. The PCR (polymerase chain reaction) was used to amplify the mitochondrial COI gene using a primer pair for Fish F1 and Fish R1 primers. The sequencing, genetic variation, and phylogenetic relationships were established using DNAMAN and MEGA version 7 software. The study concluded that morphologically and genetically Sperata species occurring in the indus river is S. seenghala, and there was no evidence of phenotypic plasticity or genetic difference.  The present study aims to identify genetically S. seenghala of the indus river in Pakistan.

References

Acharya, A.P., Pavan-Kumar, A., Gireesh-Babu, P., Joshi, C.G., Chaudhari, A. & Krishna, G. (2019). Population genetics of Indian giant river-catfish, Sperata seenghala (Sykes, 1839) using microsatellite markers. Aquatic Living Resources, 32: 4. https://doi.org/10.1051/alr/2019002

Ahmed, N. (1943). Fauna of Lahore. 5 Fishes of Lahore. Bulletin of the Department of Zoology, Punjab University, Lahore, 1: 253–374.

Brown, W.M., George, M. & Wilson, A.C. (1979). Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America, 76(4): 1967–1971.

Chen, Y., Chen, X., Wang, H., Bao, Y., & Zhang, W. (2020). Translational selection dominates over mutational bias in shaping nucleotide composition in bacteria. Nature Communications, 11(1), 1–12. https://doi.org/10.1038/s41467-020-18064-w

Dayrat, B. (2005). Towards integrative taxonomy. Biological Journal of the Linnean Society, 85(3): 407–417.

Ferraris, C.J. Jr. & Runge, K.E. (1999). Revision of the South Asian bagrid catfish genus Sperata, four species of catfishes of the Punarbhaba River in India. Indian Journal of Fisheries, 58(4): 79–85.

Forsberg, K.J., Patel, S., Witt, E., Wang, B., Ellison, T.D., Dantas, G. & Andersson, D.I. (2017). Temperature drives evolutionary rates in prokaryotes. The ISME Journal, 11(8): 1879–1886. https://doi.org/10.1038/ismej.2017.33

Frank, A.C. & Lobry, J.R. (1999). Asymmetric substitution patterns: A review of possible underlying mutational or selective mechanisms. Gene, 238(1): 65–77.

Froese, R. & Pauly, D. (Eds.) (2011). FishBase. [version 10/2011]. http://www.fishbase.org

Hajibabaei, M., Singer, G.A., Hebert, P.D. & Hickey, D.A. (2007). DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics, 23(4): 167–172.

Hamilton, F. (1822). An account of the fishes found in the river Ganges and its tributaries. Edinburgh and London.

Hebert, P.D.N., Ratnasingham, S. & de Waard, J.R. (2003). Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society of London B: Biological Sciences, 270(Suppl 1): S96–S99. http://doi.org/10.1098/rsbl.2003.0025

Hossain, M.Y., Uddin, M., Rahman, M.A., Haque, M.K., Kormoker, T., Samad, M.A., Tanjin, S., Rahman, M.A., Parvin, M.F., Sarmin, M.S. & Mawa, Z., 2023. Species identification, reproductive biology, and nutritional value of marine shellfish (Meretrix lyrata) in the Bay of Bengal. Marine Environmental Research, 192, p.106222.

IUCN. (2020). Global Standard for Nature-based Solutions. A user-friendly framework for the verification, design and scaling up of NbS. First edition.

Jayaram, K.C. (1999). Systematic account of Siluriformes fishes. In: The fresh water fishes of the Indian region. Narendra Publishing House, New Delhi, 220-318 pp.

Jatoi, S., Baloch, W.A., Soomro, A.N. & Gachal, G.S. (2013). Length-weight relationship of the Silurid catfish Sperata seenghala Sykes 1839 (Bagridae) from Indus River, Sindh, Pakistan. Sindh University Research Journal-SURJ (Science Series), 45(4): 661-664.

Jukes, T.H. & Cantor, C.R. (1969). Evolution of Protein Molecules. In: Munro, H.N. (Ed.), Mammalian Protein Metabolism, Academic Press, New York, 21-132. http://dx.doi.org/10.1016/B978-1-4832-3211-9.50009-7

Kimura, M. (1980). A Simple Method for Estimating Evolutionary Rate of Base Substitutions through Comparative Studies of Nucleotide Sequences. Journal of Molecular Evolution, 16: 111-120. https://doi.org/10.1007/BF01731581

Lakra, W.S., Goswami, M. & Mohindra, V. (2007). Molecular identification of five Indian sciaenids (Pisces: Perciformes, Sciaenidae) using RAPD markers. Hydrobiologia, 585: 359-363. doi:10.1007/s10750-006-0480-x

Lassalle, F., Périan, S., Bataillon, T., Nesme, X., Duret, L. & Daubin, V. (2015). GC-biased gene conversion in bacteria: A possible explanation for codon usage trends? PLoS Genetics, 11(3): e1005044. https://doi.org/10.1371/journal.pgen.1005044

Mawa, Z., Hossain, M., Hasan, M., Tanjin, S., Rahman, M.A., Ohtomi, J. & Islam, M.J. (2022). Life history traits of Mystus vittatus in the Ganges River, Bangladesh: recommendation for its sustainable management considering climate change. International Journal of Biometeorology, 66: 927-943. https://doi.org/10.1007/s00484-022-02249-7

Menon, A.G.K. (1999). Checklist - fresh water fishes of India. Records of the Zoological Survey of India, Miscellaneous Publication, Occasional Paper No. 175, 366 p.

Mirza, M.R. (1990). Freshwater fishes in Pakistan (in Urdu). Urdu Science Board, Lahore.

Mirza, M.R., Nawaz, H. & Javed, M.N. (1992). A note on the fishes of genus Aorichthys Wu with the description of a new subspecies. Pakistan Journal of Zoology, 24: 211-213.

Mirza, M.R. (2003). Checklist of freshwater fishes of Pakistan. Pakistan Journal of Zoology, Supplementary Series, 3: 1-30.

Nawaz, H., Sharif, M.H. & Mirza, M.R. (1994). Food of the singhari, Aorichthys aor sarwari, and observations on the biology of Mystus seenghala (Sykes) from the river Brahmaputra in Assam. Journal of Inland Fisheries Society of India, 21: 47-54.

Rafique, M. & Khan, N.U.H. (2012). Distribution and status of significant freshwater fishes of Pakistan. Records: Zoological Survey of Pakistan, 21: 90-95.

Saini, A., Dua, A. & Mohindra, V. (2008). Comparative morphometrics of two populations of giant river catfish (Mystus seenghala) from the Indus River system. Integrative Zoology, 3: 219-226.

Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4(4): 406-425.

Sambrook, J. & Russell, D.W. (2001). Detection of DNA in agarose gels. Molecular Cloning: A Laboratory Manual (3rd Ed.). Cold Spring Harbor Laboratory Press, New York: 5-14.

Sehgal, P. (1967). Food and feeding habits of Mystus seenghala Sykes. Research Bulletin of the Panjab University Science, 18: 149-155.

Seward, E.A. & Kelly, S. (2016). Energetic constraints drive nucleotide usage in prokaryotes. Proceedings of the Royal Society B, 283(1837): 20161456. https://doi.org/10.1098/rspb.2016.1456

Shakir, H.A. (2008). Meristic and morphometric study of Sperata sarwari from Mangla Lake, Pakistan. Punjab University Journal of Zoology, 23(1-2): 9-18.

Shakir, H.A., Mirza, M.R., Khan, A.M. & Abid, M. (2008). Weight length and condition factor relationship of Sperata sarwari (Singhari) from Mangla Lake, Pakistan. Journal of Animal and Plant Sciences, 18(4): 158-161.

Surjya, N.D., Abhijeet, S. & Anuj, T. (2022). Study on biometrics and genetic variability of giant river catfish Sperata seenghala from Harike Wetland - A Ramsar site. Journal of Experimental Zoology India, 25: 1123-1128. DocID: https://connectjournals.com/03895.2022.25.1123

Talwar, P.K. & Jhingran, A.G. (1991). Inland Fishes of India and Adjacent Countries, Vol. 1. Oxford and IBH Publishing Co. Pvt. Ltd., New Delhi, Bombay: 1027-1028.

Ward, R.D., Zemlak, T.S., Innes, B.H., Last, P.R. & Hebert, P.D. (2005). DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society B: Biological Sciences, 360(1462): 1847-1857.

Wei, Y., Silke, J. R., Xia, X., & Lin, W. (2019). Oxidative stress and mutational bias shape nucleotide composition in microbial genomes. Molecular Biology and Evolution, 36(5), 991–1003. https://doi.org/10.1093/molbev/msz036

Wilfinger, W.W., Mackey, K. & Chomczynski, P. (1997). Effect of pH and ionic strength on the spectrophotometric assessment of nucleic acid purity. Biotechniques, 22(3): 474-481.

Yadav, A., Thakur, J.K. & Yadav, G. (2017). KIXBASE: A comprehensive web resource for identification and exploration of KIX domains. Scientific Reports, 7(1): 14924.

Downloads

Published

2025-04-30

Issue

Section

Research Articles

How to Cite

Phenotypic plasticity and genetic stock identification of Sperata seenghala (Sykes, 1839), the giant river-catfish, at indus river, Sindh, Pakistan. (2025). Zoo Botanica, 3(1), 125-133. https://doi.org/10.55627/zoobotanica.003.01.1303

Similar Articles

41-50 of 78

You may also start an advanced similarity search for this article.