Unleashing the Biocontrol Potential of Compost-inhabiting and Rhizobacteria for Sustainable Plant Health

Authors

  • Naseem Akhtar Biochemistry Section, Ayub Agricultural Research Institute Faisalabad
  • Muhammad Hasan Abdullah University of Agriculture Faisalabad image/svg+xml
  • Muhammad Aqeel Feroze Horticulture Section, Barani Agricultural Research Institute Chakwal
  • Naveeda Anjum Horticulture Section, Barani Agricultural Research Institute Chakwal
  • Syed Zia ul Hasan Hill Fruit Research Station, Sunny Bank Murree
  • Muhammad Abubakar Siddique Biochemistry Section, Ayub Agricultural Research Institute Faisalabad
  • Muhammad Saeed Ashraf Crop Physiology Section, Agronomic Research Institute, Faisalabad
  • Waqar Ahmad Biochemistry Section, Ayub Agricultural Research Institute Faisalabad
  • Muhammad Arfan ul Haq Institute of Soil Chemistry and Environmental Sciences, Faisalabad
  • Maryam Sarfraz Biochemistry Section, Ayub Agricultural Research Institute Faisalabad
  • Sumreen Siddiq Biochemistry Section, Ayub Agricultural Research Institute Faisalabad
  • Muhammad Sarfraz Soil Salinity Research Institute, Pindi Bhattian
  • Muhammad Rizwan Soil Salinity Research Institute, Pindi Bhattian

DOI:

https://doi.org/10.55627/agrivet.004.01.01225

Keywords:

Biocontrol, Compost Inhabiting Bacteria, Disease Suppression, PGPR

Abstract

Microbial populations play a vital role in plant health, protecting them from pathogens and diseases. They boost the growing up plant by protecting it from different harmful microbes and diseases. Beneficial microorganisms in compost and rhizobacteria suppress diseases through mechanisms like competition, antibiotic production, parasitism, and induced resistance (ISR, SAR). Compost promotes the growth of crops particularly by controlling the diseases. They do this by the activities of the beneficial microorganisms reside in it and their competition dominance for energy. Other mechanisms of disease suppression are through production of antibiotic compounds, parasitism/ predation, activation of disease-resistant genes and through improving the defensive capacity of plant through. They perform as disease controlling agents and suppress the diseases by stimulating the beneficial symbiosis and protecting the plant by the degradation of harmful compounds in growth suppressing soil. Augmentation of rhizosphere with rhizobacteria, isolated from the same environment, provides better control of diseases because they are acclimatized in the proposed rhizospheric conditions. The disease suppression mechanism is same as that of compost inhabiting bacteria. PGPR and compost inhabiting bacteria must survive, colonized, ecologically fit and function in the specific environmental conditions to act as biocontrol agents. Varied microbes showed diverse antagonistic activity under different environmental conditions. Plant growth-promoting rhizobacteria (PGPR) and compost-inhabiting bacteria can act as biocontrol agents, promoting sustainable plant health. The objective of this review is to critically evaluate the current understanding of these microorganisms, highlighting their potential and identifying future research avenues.

References

Abaidoo, R. C., Killani, A., Akintokun, A., & Abiala, M., 2011. Antagonistic effect of indigenous Bacillus subtilis on root-/soil borne fungal pathogens of cowpea.

Ahmad, F., Ahmad, I., & Khan, M., 2008. Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities. Microbiological research 163(2), 173-181.

Argenziano, M. G., Bruce, S. L., Slater, C. L., Tiao, J. R., Baldwin, M. R., Barr, R. G., . . . Gavin, N., 2020. Characterization and clinical course of 1000 patients with coronavirus disease 2019 in New York: retrospective case series. bmj, 369.

Arora, T., Eklind, Y., Rämert, B., & Alström, S., 2005. Microbial analysis and test of plant pathogen antagonism of municipal and farm composts. Biological agriculture & horticulture 22(4), 349-367.

Avilés, M., Borrero, C., & Trillas, M. I., 2011. Review on compost as an inducer of disease suppression in plants grown in soilless culture. Dynamic Soil, Dynamic Plant 5(2), 1-10.

Bailey, K. L., 2014. The bioherbicide approach to weed control using plant pathogens. In Integrated Pest Management (pp. 245-266): Elsevier.

Basu, A., Prasad, P., Das, S. N., Kalam, S., Sayyed, R. Z., Reddy, M. S., & El Enshasy, H. (2021). Plant growth promoting rhizobacteria (PGPR) as green bioinoculants: recent developments, constraints, and prospects. Sustainability, 13(3), 1140.

Benítez, N., Moles, M., Aguerri, J., Alfaro, E., Broadhurst, T., Cabrera-Cano, J., Cristóbal-Hornillos, D., 2009. Optimal filter systems for photometric redshift estimation. The Astrophysical Journal 692(1), L5.

Bharathi, R., Vivekananthan, R., Harish, S., Ramanathan, A., & Samiyappan, R., 2004. Rhizobacteria-based bio-formulations for the management of fruit rot infection in chillies. Crop Protection, 23(9) 835-843.

Boehm, A. B., Yamahara, K. M., Love, D. C., Peterson, B. M., McNeill, K., & Nelson, K. L., 2009. Covariation and photoinactivation of traditional and novel indicator organisms and human viruses at a sewage-impacted marine beach. Environmental science & technology 43(21), 8046-8052.

Brown, J. H., Gillooly, J. F., Allen, A. P., Savage, V. M., & West, G. B. 2004. Toward a metabolic theory of ecology. Ecology 85(7), 1771-1789.

Carisse, O., & Provost, C., 2024. Cluster Zone Leaf Removal Reduces the Rate of Anthracnose (Elsinöe ampelina) Progress and Facilitates Its Control. Plant Disease 108(3), 608-615.

Cazorla, M., de Carvalho, F. D., Chohan, M. O., Shegda, M., Chuhma, N., Rayport, S., Kellendonk, C., 2014. Dopamine D2 receptors regulate the anatomical and functional balance of basal ganglia circuitry. Neuron 81(1), 153-164.

Chaloner, T. M., Gurr, S. J., & Bebber, D. P., 2021. Plant pathogen infection risk tracks global crop yields under climate change. Nature Climate Change 11(8), 710-715.

Charles, C., 2007. A review of recent laboratory double layer experiments. Plasma sources science and technology 16(4), R1.

Chernin, L., & Chet, I., 2002. Microbial enzymes in biocontrol of plant pathogens and pests. Enzymes in the environment: activity, ecology, and applications 171-225.

Clercq, E. D., 2004. Antivirals and antiviral strategies. Nature reviews microbiology 2(9), 704-720.

Cohen-Kupiec, R., & Chet, I., 1998. The molecular biology of chitin digestion. Current opinion in biotechnology 9(3), 270-277.

Cotxarrera, L., Trillas-Gay, M., Steinberg, C., & Alabouvette, C., 2002. Use of sewage sludge compost and Trichoderma asperellum isolates to suppress Fusarium wilt of tomato. Soil Biology and Biochemistry 34(4), 467-476.

de Souza, C. R., Maroco, J. P., Dos Santos, T. P., Rodrigues, M. L., Lopes, C. M., Pereira, J. S., & Chaves, M. M., 2003. Partial rootzone drying: regulation of stomatal aperture and carbon assimilation in field-grown grapevines (Vitis vinifera cv. Moscatel). Functional Plant Biology 30(6), 653-662.

Devarajan, R., Jayaraman, J. K., Somasundaram, S. M., Ragupathy, S., Raman, P., Sathiamoorthy, K., & Subbaraya, U., 2021. Genetic diversity in fresh fruit pulp mineral profile of 100 Indian Musa accessions. Food chemistry 361, 130080.

Dey, R., Pal, K., Bhatt, D., & Chauhan, S., 2004. Growth promotion and yield enhancement of peanut (Arachis hypogaea L.) by application of plant growth-promoting rhizobacteria. Microbiological research 159(4), 371-394.

Diánez, F., Santos, M., & Tello, J. C., 2007. Suppressive effects of grape marc compost on phytopathogenic oomycetes. Archives of phytopathology and plant protection 40(1), 1-18.

Duffy, J. E., 2003. Biodiversity loss, trophic skew and ecosystem functioning. Ecology letters 6(8), 680-687.

Durrant, W. E., & Dong, X., 2004. Systemic acquired resistance. Annu. Rev. Phytopathol 42(1), 185-209.

El-Tarabily, K. A., 2006. Rhizosphere-competent isolates of streptomycete and non-streptomycete actinomycetes capable of producing cell-wall-degrading enzymes to control Pythium aphanidermatum damping-off disease of cucumber. Botany 84(2), 211-222.

Fones, H. N., Bebber, D. P., Chaloner, T. M., Kay, W. T., Steinberg, G., & Gurr, S. J., 2020. Threats to global food security from emerging fungal and oomycete crop pathogens. Nature Food 1(6), 332-342.

Frankowski, J., Lorito, M., Scala, F., Schmid, R., Berg, G., & Bahl, H., 2001. Purification and properties of two chitinolytic enzymes of Serratia plymuthica HRO-C48. Archives of microbiology 176, 421-426.

Garbeva, P. v., Van Veen, J. A., & Van Elsas, J. D., 2004. Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness. Annu. Rev. Phytopathol 42(1), 243-270.

Joseph, D., Ng, K.-Y., Koh, C., & Ang, S., 2007. Turnover of information technology professionals: A narrative review, meta-analytic structural equation modeling, and model development. MIS quarterly 547-577.

Kaur, P., Ponniah, M., Murhekar,M.V., Ramachandran, V., Ramachandran, R., Raju, H. K., Gupte, M. D., 2008. Chikungunya outbreak, south India, 2006. Emerging infectious diseases 14(10), 1623.

Khan, N., 2020. Plant-microbial interactions and their role in sustainable agriculture and sustainability of agriculture soils. Recent Patents on Food, Nutrition & Agriculture 11(2), 94-95.

Khan, Z. I., Hussain, A., Ashraf, M., & McDowell, L., 2006. Mineral status of soils and forages in Southwestern Punjab-Pakistan: Micro-minerals. Asian-australasian journal of animal sciences 19(8), 1139-1147.

Kim, S. H., Baik, S.-H., Park, C. S., Kim, S. J., Choi, S. W., & Kim, S. E., 2011. Reduced striatal dopamine D2 receptors in people with Internet addiction. Neuroreport 22(8), 407-411.

Koch, G.H., Brongers, M.P., Thompson, N.G., Virmani, Y.P. and Payer, J.H., 2002. Corrosion cost and preventive strategies in the United States (No. FHWA-RD-01-156,, R315-01). United States. Federal Highway Administration.

Lee, C., Lee, K., & Pennings, J. M., 2001. Internal capabilities, external networks, and performance: a study on technology‐based ventures. Strategic management journal 22(6‐7), 615-640.

LI, Y., LI, G., HUANG, Z., MIAO, J., & Liu, X., 2022. Research progress on the occurrence, damage and prevention of Fusarium crown rot caused by Fusarium pseudograminearum. Chinese Journal of Pesticide Science, 24(5), 949-961

Litterick, A., Harrier, L., Wallace, P., Watson, C., & Wood, M., 2004. The role of uncomposted materials, composts, manures, and compost extracts in reducing pest and disease incidence and severity in sustainable temperate agricultural and horticultural crop productiona review. Critical reviews in plant sciences 23(6), 453-479.

Lucas, J., 2011. Advances in plant disease and pest management. The Journal of Agricultural Science 149(S1), 91-114.

Manwar, A., Khandelwal, S., Chaudhari, B., Meyer, J., & Chincholkar, S., 2004. Siderophore production by a marine Pseudomonas aeruginosa and its antagonistic action against phytopathogenic fungi. Applied biochemistry and biotechnology 118, 243-251.

Masalha, J., Kosegarten, H., Elmaci, Ö., & Mengel, K., 2000. The central role of microbial activity for iron acquisition in maize and sunflower. Biology and Fertility of Soils 30, 433-439.

Mavrodi, D. V., Blankenfeldt, W., & Thomashow, L. S., 2006. Phenazine compounds in fluorescent Pseudomonas spp. biosynthesis and regulation. Annu. Rev. Phytopathol 44(1), 417-445.

Mazurier, S., Corberand, T., Lemanceau, P., & Raaijmakers, J. M., 2009. Phenazine antibiotics produced by fluorescent pseudomonads contribute to natural soil suppressiveness to Fusarium wilt. The ISME journal 3(8), 977-991.

Miethke, M., & Marahiel, M. A., 2007. Siderophore-based iron acquisition and pathogen control. Microbiology and molecular biology reviews 71(3), 413-451.

Miljaković, D., Marinković, J., Balešević-Tubić, S., 2020. The significance of Bacillus spp. in disease suppression and growth promotion of field and vegetable crops. Microorganisms 8(7), 1037.

Mishra, G. R., Suresh, M., Kumaran, K., Kannabiran, N., Suresh, S., Bala, P., . . . Raghavan, T. M., 2006. Human protein reference database—2006 update. Nucleic acids research, 34(suppl-1), D411-D414.

Mishra, R. S., & Ma, Z., 2005. Friction stir welding and processing. Materials science and engineering: R: reports 50(1-2), 1-78.

Mitter, B., Petric, A., Shin, M. W., Chain, P. S., Hauberg-Lotte, L., Reinhold-Hurek, B., Sessitsch, A., 2013. Comparative genome analysis of Burkholderia phytofirmans PsJN reveals a wide spectrum of endophytic lifestyles based on interaction strategies with host plants. Frontiers in plant science 4, 120.

Nandakumar, R., Babu, S., Viswanathan, R., Raguchander, T., & Samiyappan, R., 2001. Induction of systemic resistance in rice against sheath blight disease by Pseudomonas fluorescens. Soil Biology and Biochemistry 33(4-5), 603-612.

Noble, R., & Coventry, E., 2005. Suppression of soil-borne plant diseases with composts: a review. Biocontrol science and technology 15(1), 3-20.

Notz, D., 2005. Thermodynamic and fluid-dynamical processes in sea ice. University of Cambridge Cambridge,

Ntougias, S., Papadopoulou, K. K., Zervakis, G. I., Kavroulakis, N., & Ehaliotis, C., 2008. Suppression of soil-borne pathogens of tomato by composts derived from agro-industrial wastes abundant in Mediterranean regions. Biology and Fertility of Soils 44, 1081-1090.

Ongena, M., Jourdan, E., Adam, A., Paquot, M., Brans, A., Joris, B., Thonart, P., 2007. Surfactin and fengycin lipopeptides of Bacillus subtilis as elicitors of induced systemic resistance in plants. Environmental Microbiology, 9(4), 1084-1090.

Özkoç, İ., Deliveli, M. H., 2001. In vitro inhibition of the mycelial growth of some root rot fungi by Rhizobium leguminosarum biovar phaseoli isolates. Turkish Journal of Biology 25(4), 435-445.

Pang, Z., Chen, J., Wang, T., Gao, C., Li, Z., Guo, L., Cheng, Y., 2021. Linking plant secondary metabolites and plant microbiomes: a review. Frontiers in plant science 12, 621276.

Perneel, M., D'hondt, L., De Maeyer, K., Adiobo, A., Rabaey, K., & Höfte, M., 2008. Phenazines and biosurfactants interact in the biological control of soil‐borne diseases caused by Pythium spp. Environmental Microbiology 10(3), 778-788.

Pieterse, C. M., Van Pelt, J. A., Van Wees, S. C., Ton, J., Léon-Kloosterziel, K. M., Keurentjes, J. J., Bakker, P.A., 2001. Rhizobacteria-mediated induced systemic resistance: triggering, signalling and expression. European Journal of Plant Pathology, 107, 51-61.

Pirgozliev, S. R., Edwards, S. G., Hare, M. C., & Jenkinson, P., 2003. Strategies for the control of Fusarium head blight in cereals. European Journal of Plant Pathology 109, 731-742.

Postma, M., Roelofs, J., Goedhart, J., Gadella, T. W., Visser, A. J., & Van Haastert, P. J., 2003. Uniform cAMP stimulation of Dictyostelium cells induces localized patches of signal transduction and pseudopodia. Molecular biology of the cell 14(12), 5019-5027.

Pugliese, M., Liu, B., Gullino, M. L., & Garibaldi, A., 2008. Selection of antagonists from compost to control soil-borne pathogens/Selektion von Antagonisten aus Kompost zur Kontrolle bodenbürtiger Pathogene. Journal of Plant Diseases and Protection 220-228.

Raaijmakers, J. M., De Bruijn, I., Nybroe, O., & Ongena, M., 2010. Natural functions of lipopeptides from Bacillus and Pseudomonas: more than surfactants and antibiotics. FEMS microbiology reviews 34(6), 1037-1062.

Raaijmakers, J. M., Vlami, M., & De Souza, J. T., 2002. Antibiotic production by bacterial biocontrol agents. Antonie van leeuwenhoek 81, 537-547.

Ramamoorthy, V., Viswanathan, R., Raguchander, T., Prakasam, V., & Samiyappan, R., 2001. Induction of systemic resistance by plant growth promoting rhizobacteria in crop plants against pests and diseases. Crop Protection 20(1), 1-11.

Ramette, A., Frapolli, M., Défago, G., & Moënne-Loccoz, Y., 2003. Phylogeny of HCN synthase-encoding hcnBC genes in biocontrol fluorescent pseudomonads and its relationship with host plant species and HCN synthesis ability. Molecular Plant-Microbe Interactions 16(6), 525-535.

Ryall, M. D., 2009. Causal ambiguity, complexity, and capability-based advantage. Management Science 55(3), 389-403.

Saeed, Q., Xiukang, W., Haider, F. U., Kučerik, J., Mumtaz, M. Z., Holatko, J., Naveed, M., 2021. Rhizosphere bacteria in plant growth promotion, biocontrol, and bioremediation of contaminated sites: a comprehensive review of effects and mechanisms. International journal of molecular sciences 22(19), 10529.

Santoyo, G., Urtis-Flores, C. A., Loeza-Lara, P. D., Orozco-Mosqueda, M. d. C., & Glick, B. R., 2021. Rhizosphere colonization determinants by plant growth-promoting rhizobacteria (PGPR). Biology 10(6), 475.

Sayyed, R., Badgujar, M., Sonawane, H., Mhaske, M., & Chincholkar, S., 2005. Production of microbial iron chelators (siderophores) by fluorescent Pseudomonads.

Scheuerell, M. D., Zabel, R. W., & Sandford, B. P., 2009. Relating juvenile migration timing and survival to adulthood in two species of threatened Pacific salmon (Oncorhynchus spp.). Journal of Applied Ecology 46(5), 983-990.

Segarra, K. E., Comerford, C., Slaughter, J., & Joye, S. B., 2013. Impact of electron acceptor availability on the anaerobic oxidation of methane in coastal freshwater and brackish wetland sediments. Geochimica et Cosmochimica Acta 115, 15-30.

Sharma, U. C., Hariprasad, P., Satya, S., 2024. Efficacy evaluation of Eucalyptus globulus essential oil-based nanoemulsion-a green insecticide against Callosobruchus maculatus. International Journal of Tropical Insect Science 1-10.

Silini, A., Ghilardi, C., Figini, S., Sangalli, F., Fruscio, R., Dahse, R., Bani, M., 2012. Regulator of G-protein signaling 5 (RGS5) protein: a novel marker of cancer vasculature elicited and sustained by the tumor’s proangiogenic microenvironment. Cellular and molecular life sciences 69, 1167-1178.

Sing, D. K., Vidal-Madjar, A., Des Etangs, A. L., Désert, J.-M., Ballester, G., & Ehrenreich, D., 2008. Determining atmospheric conditions at the terminator of the hot Jupiter HD 209458b. The Astrophysical Journal 686(1), 667.

Someya, S., Yamasoba, T., Weindruch, R., Prolla, T. A., & Tanokura, M., 2007. Caloric restriction suppresses apoptotic cell death in the mammalian cochlea and leads to prevention of presbycusis. Neurobiology of aging 28(10), 1613-1622.

Stone, H. B., Moulder, J. E., Coleman, C. N., Ang, K. K., Anscher, M. S., Barcellos-Hoff, M. H., Greenberger, J. S., 2004. Models for evaluating agents intended for the prophylaxis, mitigation and treatment of radiation injuries report of an NCI workshop, December 3–4, 2003. Radiation research 162(6), 711-728.

Stone, M., DeForest, J., & Plante, A., 2014. Changes in extracellular enzyme activity and microbial community structure with soil depth at the Luquillo Critical Zone Observatory. Soil Biology and Biochemistry 75, 237-247.

Surya, P., Manikanta, K. N. V., Sharma, S., & Wani, A. W. 2022. Effect of compost on the growth of plant and management of the soil

Thomashow, M. F., 1999. Plant cold acclimation: freezing tolerance genes and regulatory mechanisms. Annual review of plant biology 50(1) 571-599.

Trillas, M., & Segarra, G., 2009. Interactions between nonpathogenic fungi and plants. Advances in Botanical Research 51, 321-359.

Trillas, M. I., Casanova, E., Cotxarrera, L., Ordovás, J., Borrero, C., & Avilés, M., 2006. Composts from agricultural waste and the Trichoderma asperellum strain T-34 suppress Rhizoctonia solani in cucumber seedlings. Biological Control 39(1), 32-38.

Van Loon, L., 2007. Plant responses to plant growth-promoting rhizobacteria. New perspectives and approaches in plant growth-promoting Rhizobacteria research 243-254.

Verma, J. P., Yadav, J., Tiwari, K. N., Lavakush, S., & Singh, V., 2010. Impact of plant growth promoting rhizobacteria on crop production. International journal of agricultural research 5(11), 954-983.

Vivekananthan, R., Ravi, M., Ramanathan, A., & Samiyappan, R., 2004. Lytic enzymes induced by Pseudomonas fluorescens and other biocontrol organisms mediate defence against the anthracnose pathogen in mango. World Journal of Microbiology and Biotechnology 20, 235-244.

Wang, P., Changa, C., Watson, M., Dick, W., Chen, Y., & Hoitink, H. A., 2004. Maturity indices for composted dairy and pig manures. Soil Biology and Biochemistry 36(5), 767-776.

Whipps, J. M. 2001. Microbial interactions and biocontrol in the rhizosphere. Journal of experimental botany 52(suppl-1), 487-511.

Yan, W., 2002. Singular‐value partitioning in biplot analysis of multienvironment trial data. Agronomy journal 94(5), 990-996.

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2025-04-30

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Review Articles

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Unleashing the Biocontrol Potential of Compost-inhabiting and Rhizobacteria for Sustainable Plant Health (N. . Akhtar, M. H. . Abdullah, M. A. . Feroze, N. . Anjum, S. Z. ul . Hasan, M. A. . Siddique, M. S. . Ashraf, W. . Ahmad, M. . Arfan ul Haq, M. . Sarfraz, S. . Siddiq, M. . Sarfraz, & M. . Rizwan, Trans.). (2025). Journal of Agriculture and Veterinary Science, 4(1), 133-141. https://doi.org/10.55627/agrivet.004.01.01225

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